PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016435166.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 250aa    MW: 28277.8 Da    PI: 9.9716
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016435166.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.91.2e-151199198
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                    ffkv++p   + ++ l++p  f+ + +g+k e  + tl++    +W+v +   +++++ +++ kGW++Fv+  +Lk gDf vF++ g+++f   v++
  XP_016435166.1 11 FFKVMVP---GFHAKLTIPPAFCLKLKGEKSE--KGTLKH-GKGTWNVGI--GRSKNGvMWFDKGWEQFVQNYNLKIGDFAVFEHLGNMNF--SVSL 97
                    6777744...456679*******999887555..566666.4569*****..777777799************************999999..7777 PP

                    E- CS
              B3 97 fr 98
                    ++
  XP_016435166.1 98 LD 99
                    66 PP

2B351.61.6e-161632381488
                     T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
              B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                       l +p +f+ ++ +   +++t+tl+ +sg s  v l+++ ++++  +++t+GW++F ++n+Lk+gD+++F+ d++ s
  XP_016435166.1 163 PYLHIPTEFCHSNALL--QNTTITLTGPSGISCPVSLRICPGGKTlyVIMTTGWRDFFSSNKLKVGDVCIFQIDRTnS 238
                     4589******999877..6779***************8877777798999**********************887634 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.6178101IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-209103IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-15999No hitNo description
SuperFamilySSF1019363.53E-1810103IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-121198IPR003340B3 DNA binding domain
SMARTSM010191.2E-1411101IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.3E-17146244IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.19E-17148235IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.5E-6149242IPR003340B3 DNA binding domain
CDDcd100174.35E-15149238No hitNo description
PROSITE profilePS5086311.11150250IPR003340B3 DNA binding domain
PfamPF023624.3E-14164239IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MENELPISRR FFKVMVPGFH AKLTIPPAFC LKLKGEKSEK GTLKHGKGTW NVGIGRSKNG  60
VMWFDKGWEQ FVQNYNLKIG DFAVFEHLGN MNFSVSLLDS TGCDKKFLML EDGKQQVPSQ  120
VKSPECRIEK RKPEGDVLIH QYVKGSSEFT ARIKEYNVRK RSPYLHIPTE FCHSNALLQN  180
TTITLTGPSG ISCPVSLRIC PGGKTLYVIM TTGWRDFFSS NKLKVGDVCI FQIDRTNSDS  240
KSITMNVRVM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016435166.10.0PREDICTED: putative B3 domain-containing protein REM15 isoform X1
TrEMBLM1CBG71e-131M1CBG7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000639321e-131(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85361630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.11e-22B3 family protein